If I use the screen recorder mode, setting it to focus, I don't get this issue, however half the time I am incnovinced by having to manually re size the capture window not to screen record the file menu, which is a pain in the rear and I'd rather use the Direct X capture mode.
System specs are: Haswell i5-4670k, 8GB Ram, Radeon 7870, running Win8.1 x64 fully patched. I am trying to record this in 720p using AMD APP - I have tried the other settings and formats (MP4 using CPU, AVI), and the same glitch occurs

Below is a screenshot of the problem: